IL_6GAW_052

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_052 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.1367

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6GAW|1|BA|A|214
6GAW|1|BA|A|215
6GAW|1|BA|C|216
*
6GAW|1|BA|G|230
6GAW|1|BA|C|231
6GAW|1|BA|U|232

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B8

Mitochondrial ribosomal protein L35

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

39S ribosomal protein L15, mitochondrial

Chain Bb

Mitochondrial ribosomal protein L38

Chain Bl

39S ribosomal protein L49, mitochondrial

Chain Bt

Mitochondrial ribosomal protein L57