IL_6GAW_060
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAG*CUAAC
- Length
- 8 nucleotides
- Bulged bases
- 6GAW|1|BA|A|323, 6GAW|1|BA|U|335, 6GAW|1|BA|A|336, 6GAW|1|BA|A|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAW_060 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.0973
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6GAW|1|BA|G|322
6GAW|1|BA|A|323
6GAW|1|BA|G|324
*
6GAW|1|BA|C|334
6GAW|1|BA|U|335
6GAW|1|BA|A|336
6GAW|1|BA|A|337
6GAW|1|BA|C|338
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BD
- 39S ribosomal protein L2, mitochondrial
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BW
- uL22m
- Chain Bi
- mL45
Coloring options: