IL_6GAW_064

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAG*CAUC

Length

8 nucleotides

Bulged bases

6GAW|1|BA|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_064 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.1848

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

6GAW|1|BA|G|504
6GAW|1|BA|U|505
6GAW|1|BA|A|506
6GAW|1|BA|G|507
*
6GAW|1|BA|C|521
6GAW|1|BA|A|522
6GAW|1|BA|U|523
6GAW|1|BA|C|524

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BK

Mitochondrial ribosomal protein L11

Chain BQ

39S ribosomal protein L16, mitochondrial

Chain Bq

mL54