IL_6GAW_108

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_108 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0654

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

6GAW|1|BA|G|801
6GAW|1|BA|G|802
6GAW|1|BA|A|803
6GAW|1|BA|A|804
6GAW|1|BA|C|805
6GAW|1|BA|U|806
6GAW|1|BA|C|807
6GAW|1|BA|G|808
6GAW|1|BA|G|809
*
6GAW|1|BA|C|985
6GAW|1|BA|U|986
6GAW|1|BA|G|987
6GAW|1|BA|U|988
6GAW|1|BA|C|989

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BE

ICT1

Chain BO

uL14m

Chain BT

Mitochondrial ribosomal protein L19