IL_6GAZ_005

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_005 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.1617

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6GAZ|1|AA|C|78
6GAZ|1|AA|C|79
*
6GAZ|1|AA|G|103
6GAZ|1|AA|A|104
6GAZ|1|AA|G|105

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AQ

Mitochondrial ribosomal protein S17

Chain Ac

Mitochondrial ribosomal protein S25

Chain Aj

Mitochondrial ribosomal protein S34