IL_6GAZ_008

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_008 not in the Motif Atlas

Geometric match to IL_1NTA_003

Geometric discrepancy: 0.2043

The information below is about IL_1NTA_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6GAZ|1|AA|G|116
6GAZ|1|AA|C|117
6GAZ|1|AA|A|118
6GAZ|1|AA|C|119
*
6GAZ|1|AA|G|133
6GAZ|1|AA|C|134

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AO

Mitochondrial ribosomal protein S15

Chain AQ

Mitochondrial ribosomal protein S17

Chain Aj

Mitochondrial ribosomal protein S34

Chain An

Aurora kinase A interacting protein 1