IL_6GAZ_013

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_013 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1183

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6GAZ|1|AA|G|226
6GAZ|1|AA|A|227
6GAZ|1|AA|G|228
*
6GAZ|1|AA|C|269
6GAZ|1|AA|C|270
6GAZ|1|AA|C|271

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain Ap

28S ribosomal protein S18b, mitochondrial

Chain BC

Translation initiation factor IF-2, mitochondrial