IL_6GAZ_017

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAA*UGACA

Length

10 nucleotides

Bulged bases

6GAZ|1|AA|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_017 not in the Motif Atlas

Geometric match to IL_4V9F_037

Geometric discrepancy: 0.1923

The information below is about IL_4V9F_037

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

6GAZ|1|AA|U|301
6GAZ|1|AA|U|302
6GAZ|1|AA|U|303
6GAZ|1|AA|A|304
6GAZ|1|AA|A|305
*
6GAZ|1|AA|U|397
6GAZ|1|AA|G|398
6GAZ|1|AA|A|399
6GAZ|1|AA|C|400
6GAZ|1|AA|A|401

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AO

Mitochondrial ribosomal protein S15

Chain AQ

Mitochondrial ribosomal protein S17

Chain Ac

Mitochondrial ribosomal protein S25