IL_6GAZ_021

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_021 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1867

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6GAZ|1|AA|G|414
6GAZ|1|AA|A|415
6GAZ|1|AA|C|416
6GAZ|1|AA|C|417
6GAZ|1|AA|C|418
*
6GAZ|1|AA|G|444
6GAZ|1|AA|C|445

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AK

Mitochondrial ribosomal protein S11