IL_6GAZ_023

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUACUACUCG*CCUAAAAC

Length

18 nucleotides

Bulged bases

6GAZ|1|AA|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_023 not in the Motif Atlas

Geometric match to IL_6UFH_002

Geometric discrepancy: 0.3847

The information below is about IL_6UFH_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6GAZ|1|AA|G|491
6GAZ|1|AA|U|492
6GAZ|1|AA|A|493
6GAZ|1|AA|C|494
6GAZ|1|AA|U|495
6GAZ|1|AA|A|496
6GAZ|1|AA|C|497
6GAZ|1|AA|U|498
6GAZ|1|AA|C|499
6GAZ|1|AA|G|500
*
6GAZ|1|AA|C|507
6GAZ|1|AA|C|508
6GAZ|1|AA|U|509
6GAZ|1|AA|A|510
6GAZ|1|AA|A|511
6GAZ|1|AA|A|512
6GAZ|1|AA|A|513
6GAZ|1|AA|C|514

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AO

Mitochondrial ribosomal protein S15

Chain An

Aurora kinase A interacting protein 1