IL_6GAZ_029
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUAC*GUG
- Length
- 8 nucleotides
- Bulged bases
- 6GAZ|1|AA|U|614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAZ_029 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1155
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GAZ|1|AA|U|612
6GAZ|1|AA|A|613
6GAZ|1|AA|U|614
6GAZ|1|AA|A|615
6GAZ|1|AA|C|616
*
6GAZ|1|AA|G|689
6GAZ|1|AA|U|690
6GAZ|1|AA|G|691
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AJ
- Mitochondrial ribosomal protein S10
- Chain AN
- Mitochondrial ribosomal protein S14
- Chain AX
- MT-CO3 mRNA, mitochondrial
- Chain Ai
- Mitochondrial ribosomal protein S33
- Chain BC
- Translation initiation factor IF-2, mitochondrial
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