IL_6GAZ_030
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CG*UCAAG
- Length
- 7 nucleotides
- Bulged bases
- 6GAZ|1|AA|C|685, 6GAZ|1|AA|A|686
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAZ_030 not in the Motif Atlas
- Homologous match to IL_6CZR_155
- Geometric discrepancy: 0.277
- The information below is about IL_6CZR_155
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6GAZ|1|AA|C|617
6GAZ|1|AA|G|618
*
6GAZ|1|AA|U|684
6GAZ|1|AA|C|685
6GAZ|1|AA|A|686
6GAZ|1|AA|A|687
6GAZ|1|AA|G|688
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AJ
- Mitochondrial ribosomal protein S10
- Chain AN
- Mitochondrial ribosomal protein S14
- Chain BC
- Translation initiation factor IF-2, mitochondrial
Coloring options: