IL_6GAZ_037

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_037 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0882

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GAZ|1|AA|G|845
6GAZ|1|AA|C|846
6GAZ|1|AA|C|847
6GAZ|1|AA|C|848
*
6GAZ|1|AA|G|923
6GAZ|1|AA|U|924
6GAZ|1|AA|A|925
6GAZ|1|AA|A|926
6GAZ|1|AA|C|927

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AV

P-site fMet-tRNAMet, mitochondrial

Chain AX

MT-CO3 mRNA, mitochondrial

Chain An

Aurora kinase A interacting protein 1