IL_6GAZ_041

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_041 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.2257

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

6GAZ|1|AA|C|860
6GAZ|1|AA|A|861
6GAZ|1|AA|A|862
6GAZ|1|AA|G|863
*
6GAZ|1|AA|C|907
6GAZ|1|AA|A|908
6GAZ|1|AA|A|909
6GAZ|1|AA|G|910

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain An

Aurora kinase A interacting protein 1

Chain BC

Translation initiation factor IF-2, mitochondrial