IL_6GB2_016

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_016 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.0832

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6GB2|1|BA|C|285
6GB2|1|BA|A|286
6GB2|1|BA|U|287
6GB2|1|BA|C|288
*
6GB2|1|BA|G|303
6GB2|1|BA|U|304
6GB2|1|BA|G|305

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B7

Mitochondrial ribosomal protein L34