IL_6GB2_020

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_020 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.3412

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6GB2|1|BA|U|502
6GB2|1|BA|A|503
6GB2|1|BA|G|504
*
6GB2|1|BA|C|524
6GB2|1|BA|A|525
6GB2|1|BA|A|526

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L10

Chain BK

Mitochondrial ribosomal protein L11

Chain Bq

Uncharacterized protein