IL_6GB2_022

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

6GB2|1|BA|A|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_022 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.166

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GB2|1|BA|G|531
6GB2|1|BA|A|532
6GB2|1|BA|A|533
6GB2|1|BA|A|534
*
6GB2|1|BA|U|545
6GB2|1|BA|C|546

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B9

Ribosomal protein

Chain BK

Mitochondrial ribosomal protein L11

Chain Bp

mL53, MRPL53

Chain Bq

Uncharacterized protein