IL_6GB2_035

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

6GB2|1|BA|U|895, 6GB2|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_035 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.0975

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6GB2|1|BA|U|884
6GB2|1|BA|G|885
*
6GB2|1|BA|U|894
6GB2|1|BA|U|895
6GB2|1|BA|A|896
6GB2|1|BA|A|897

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BD

Mitochondrial ribosomal protein L2