IL_6GB2_037

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUAAUCACUUG*CUUG

Length

16 nucleotides

Bulged bases

6GB2|1|BA|A|933, 6GB2|1|BA|U|939, 6GB2|1|BA|U|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GB2|1|BA|C|929
6GB2|1|BA|A|930
6GB2|1|BA|U|931
6GB2|1|BA|A|932
6GB2|1|BA|A|933
6GB2|1|BA|U|934
6GB2|1|BA|C|935
6GB2|1|BA|A|936
6GB2|1|BA|C|937
6GB2|1|BA|U|938
6GB2|1|BA|U|939
6GB2|1|BA|G|940
*
6GB2|1|BA|C|956
6GB2|1|BA|U|957
6GB2|1|BA|U|958
6GB2|1|BA|G|959

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BC

Translation initiation factor IF-2, mitochondrial