IL_6GB2_042

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAC*GCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_042 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.2334

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6GB2|1|BA|U|1075
6GB2|1|BA|A|1076
6GB2|1|BA|A|1077
6GB2|1|BA|C|1078
*
6GB2|1|BA|G|1138
6GB2|1|BA|C|1139
6GB2|1|BA|A|1140

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B1

Mitochondrial ribosomal protein L28