IL_6GB2_043

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_043 not in the Motif Atlas

Homologous match to IL_5J7L_326

Geometric discrepancy: 0.2436

The information below is about IL_5J7L_326

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6GB2|1|BA|A|1080
6GB2|1|BA|U|1081
6GB2|1|BA|U|1082
*
6GB2|1|BA|A|1134
6GB2|1|BA|C|1135
6GB2|1|BA|U|1136

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B1

Mitochondrial ribosomal protein L28

Chain BI

Mitochondrial ribosomal protein L9