IL_6GB2_045
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUAG*CAAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GB2_045 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.1766
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6GB2|1|BA|U|1192
6GB2|1|BA|C|1193
6GB2|1|BA|U|1194
6GB2|1|BA|A|1195
6GB2|1|BA|G|1196
*
6GB2|1|BA|C|1207
6GB2|1|BA|A|1208
6GB2|1|BA|A|1209
6GB2|1|BA|A|1210
6GB2|1|BA|A|1211
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B6
- Mitochondrial ribosomal protein L33
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BS
- Mitochondrial ribosomal protein L18
- Chain Bb
- Mitochondrial ribosomal protein L38
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