IL_6GB2_047

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_047 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.074

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6GB2|1|BA|G|1277
6GB2|1|BA|C|1278
*
6GB2|1|BA|G|1319
6GB2|1|BA|A|1320
6GB2|1|BA|C|1321

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BE

ICT1

Chain BQ

Mitochondrial ribosomal protein L16

Chain Bt

Mitochondrial ribosomal protein L57