IL_6GB2_048
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAA*UAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GB2_048 not in the Motif Atlas
- Homologous match to IL_7RQB_093
- Geometric discrepancy: 0.1323
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
6GB2|1|BA|G|1279
6GB2|1|BA|C|1280
6GB2|1|BA|A|1281
6GB2|1|BA|A|1282
*
6GB2|1|BA|U|1316
6GB2|1|BA|A|1317
6GB2|1|BA|C|1318
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain BC
- Translation initiation factor IF-2, mitochondrial
- Chain BJ
- Mitochondrial ribosomal protein L10
- Chain BQ
- Mitochondrial ribosomal protein L16
- Chain Bt
- Mitochondrial ribosomal protein L57
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