IL_6GB2_049

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

6GB2|1|BA|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_049 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.2041

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6GB2|1|BA|A|1282
6GB2|1|BA|U|1283
6GB2|1|BA|C|1284
*
6GB2|1|BA|G|1312
6GB2|1|BA|G|1313
6GB2|1|BA|U|1314
6GB2|1|BA|U|1315
6GB2|1|BA|U|1316

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BC

Translation initiation factor IF-2, mitochondrial

Chain BJ

Mitochondrial ribosomal protein L10

Chain BQ

Mitochondrial ribosomal protein L16

Chain Bt

Mitochondrial ribosomal protein L57