IL_6GB2_052

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

6GB2|1|BA|G|1399, 6GB2|1|BA|A|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_052 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1445

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6GB2|1|BA|A|1333
6GB2|1|BA|U|1334
6GB2|1|BA|C|1335
*
6GB2|1|BA|G|1397
6GB2|1|BA|U|1398
6GB2|1|BA|G|1399
6GB2|1|BA|A|1400
6GB2|1|BA|U|1401

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B5

Mitochondrial ribosomal protein L32

Chain BE

ICT1