IL_6GBZ_070

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*UAAAC

Length

8 nucleotides

Bulged bases

6GBZ|1|A|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GBZ_070 not in the Motif Atlas

Geometric match to IL_6CK5_011

Geometric discrepancy: 0.3598

The information below is about IL_6CK5_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60572.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6GBZ|1|A|G|1840
6GBZ|1|A|U|1841
6GBZ|1|A|G|1842
*
6GBZ|1|A|U|1898
6GBZ|1|A|A|1899
6GBZ|1|A|A|1900
6GBZ|1|A|A|1901
6GBZ|1|A|C|1902

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2