IL_6GBZ_079

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUU*AAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GBZ_079 not in the Motif Atlas

Homologous match to IL_5J7L_327

Geometric discrepancy: 0.3522

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6GBZ|1|A|C|2103
6GBZ|1|A|C|2104
6GBZ|1|A|U|2105
6GBZ|1|A|U|2106
*
6GBZ|1|A|A|2183
6GBZ|1|A|A|2184
6GBZ|1|A|U|2185
6GBZ|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains