IL_6GBZ_081

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6GBZ|1|A|U|2111, 6GBZ|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GBZ_081 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4872

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6GBZ|1|A|G|2110
6GBZ|1|A|U|2111
6GBZ|1|A|G|2112
6GBZ|1|A|U|2113
6GBZ|1|A|A|2114
6GBZ|1|A|G|2115
6GBZ|1|A|G|2116
6GBZ|1|A|A|2117
6GBZ|1|A|U|2118
6GBZ|1|A|A|2119
6GBZ|1|A|G|2120
*
6GBZ|1|A|C|2178
6GBZ|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains