IL_6GBZ_116

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GBZ_116 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1049

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6GBZ|1|A|U|1851
6GBZ|1|A|U|1852
6GBZ|1|A|A|1853
6GBZ|1|A|A|1854
6GBZ|1|A|U|1855
6GBZ|1|A|U|1856
6GBZ|1|A|G|1857
6GBZ|1|A|A|1858
6GBZ|1|A|U|1859
6GBZ|1|A|G|1860
*
6GBZ|1|A|U|1882
6GBZ|1|A|U|1883
6GBZ|1|A|G|1884
6GBZ|1|A|A|1885
6GBZ|1|A|U|1886
6GBZ|1|A|C|1887
6GBZ|1|A|G|1888
6GBZ|1|A|A|1889
6GBZ|1|A|A|1890
6GBZ|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2