IL_6GC0_079

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6GC0|1|A|U|2111, 6GC0|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC0_079 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.361

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6GC0|1|A|G|2110
6GC0|1|A|U|2111
6GC0|1|A|G|2112
6GC0|1|A|U|2113
6GC0|1|A|A|2114
6GC0|1|A|G|2115
6GC0|1|A|G|2116
6GC0|1|A|A|2117
6GC0|1|A|U|2118
6GC0|1|A|A|2119
6GC0|1|A|G|2120
*
6GC0|1|A|C|2178
6GC0|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains