IL_6GC0_106

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGGC*GCGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC0_106 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.2494

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GC0|1|A|C|1357
6GC0|1|A|G|1358
6GC0|1|A|A|1359
6GC0|1|A|G|1360
6GC0|1|A|G|1361
6GC0|1|A|C|1362
*
6GC0|1|A|G|1369
6GC0|1|A|C|1370
6GC0|1|A|G|1371
6GC0|1|A|U|1372
6GC0|1|A|A|1373
6GC0|1|A|G|1374

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28