IL_6GC0_129

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6GC0|1|A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC0_129 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3712

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6GC0|1|A|C|2129
6GC0|1|A|U|2130
6GC0|1|A|U|2131
6GC0|1|A|U|2132
6GC0|1|A|G|2133
6GC0|1|A|A|2134
6GC0|1|A|A|2135
6GC0|1|A|G|2136
*
6GC0|1|A|U|2155
6GC0|1|A|G|2156
6GC0|1|A|G|2157
6GC0|1|A|A|2158
6GC0|1|A|G|2159

Current chains

Chain A

23S ribosomal RNA

Nearby chains