3D structure

PDB id
6GC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 3
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
6GC4|1|A|G|801, 6GC4|1|A|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GC4_016 not in the Motif Atlas
Geometric match to IL_5J7L_260
Geometric discrepancy: 0.2515
The information below is about IL_5J7L_260
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6GC4|1|A|G|674
6GC4|1|A|A|675
6GC4|1|A|A|676
6GC4|1|A|A|677
6GC4|1|A|C|678
*
6GC4|1|A|G|799
6GC4|1|A|A|800
6GC4|1|A|G|801
6GC4|1|A|A|802
6GC4|1|A|U|803
6GC4|1|A|A|804
6GC4|1|A|G|805
6GC4|1|A|C|806

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15

Coloring options:


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