IL_6GC4_065

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6GC4|1|A|A|1801, 6GC4|1|A|C|1816, 6GC4|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC4_065 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1282

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6GC4|1|A|U|1798
6GC4|1|A|G|1799
6GC4|1|A|C|1800
6GC4|1|A|A|1801
6GC4|1|A|A|1802
6GC4|1|A|A|1803
6GC4|1|A|C|1804
*
6GC4|1|A|G|1813
6GC4|1|A|G|1814
6GC4|1|A|A|1815
6GC4|1|A|C|1816
6GC4|1|A|G|1817
6GC4|1|A|U|1818
6GC4|1|A|A|1819
6GC4|1|A|U|1820
6GC4|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2