IL_6GC4_075

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC4_075 not in the Motif Atlas

Geometric match to IL_7Q80_001

Geometric discrepancy: 0.3214

The information below is about IL_7Q80_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6GC4|1|A|G|2110
6GC4|1|A|U|2111
6GC4|1|A|G|2112
6GC4|1|A|U|2113
6GC4|1|A|A|2114
6GC4|1|A|G|2115
6GC4|1|A|G|2116
6GC4|1|A|A|2117
6GC4|1|A|U|2118
6GC4|1|A|A|2119
6GC4|1|A|G|2120
*
6GC4|1|A|C|2178
6GC4|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains