IL_6GC4_076

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

6GC4|1|A|C|2165, 6GC4|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC4_076 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.4397

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6GC4|1|A|G|2124
6GC4|1|A|G|2125
6GC4|1|A|A|2126
6GC4|1|A|G|2127
6GC4|1|A|G|2128
*
6GC4|1|A|C|2160
6GC4|1|A|C|2161
6GC4|1|A|G|2162
6GC4|1|A|A|2163
6GC4|1|A|C|2164
6GC4|1|A|C|2165
6GC4|1|A|U|2166
6GC4|1|A|U|2167
6GC4|1|A|G|2168
6GC4|1|A|A|2169
6GC4|1|A|A|2170
6GC4|1|A|A|2171
6GC4|1|A|U|2172
6GC4|1|A|A|2173
6GC4|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains