IL_6GC6_015

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6GC6|1|A|G|801, 6GC6|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC6_015 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.2269

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6GC6|1|A|G|674
6GC6|1|A|A|675
6GC6|1|A|A|676
6GC6|1|A|A|677
6GC6|1|A|C|678
*
6GC6|1|A|G|799
6GC6|1|A|A|800
6GC6|1|A|G|801
6GC6|1|A|A|802
6GC6|1|A|U|803
6GC6|1|A|A|804
6GC6|1|A|G|805
6GC6|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4