IL_6GC6_046

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC6_046 not in the Motif Atlas

Geometric match to IL_6DVK_004

Geometric discrepancy: 0.3951

The information below is about IL_6DVK_004

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GC6|1|A|U|1474
6GC6|1|A|G|1475
6GC6|1|A|U|1476
6GC6|1|A|A|1477
6GC6|1|A|G|1478
6GC6|1|A|G|1479
*
6GC6|1|A|C|1512
6GC6|1|A|U|1513
6GC6|1|A|G|1514
6GC6|1|A|A|1515
6GC6|1|A|G|1516
6GC6|1|A|G|1517

Current chains

Chain A

23S ribosomal RNA

Nearby chains