IL_6GC6_049

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC6_049 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3294

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GC6|1|A|C|1526
6GC6|1|A|G|1527
6GC6|1|A|A|1528
6GC6|1|A|G|1529
6GC6|1|A|G|1530
*
6GC6|1|A|C|1541
6GC6|1|A|U|1542
6GC6|1|A|G|1543
6GC6|1|A|A|1544
6GC6|1|A|A|1545
6GC6|1|A|G|1546

Current chains

Chain A

23S ribosomal RNA

Nearby chains