IL_6GC6_062

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC6_062 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1628

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6GC6|1|A|C|2652
6GC6|1|A|U|2653
6GC6|1|A|A|2654
6GC6|1|A|G|2655
6GC6|1|A|U|2656
6GC6|1|A|A|2657
6GC6|1|A|C|2658
*
6GC6|1|A|G|2663
6GC6|1|A|G|2664
6GC6|1|A|A|2665
6GC6|1|A|C|2666
6GC6|1|A|C|2667
6GC6|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L14