IL_6GC7_005

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC7_005 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.176

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6GC7|1|A|G|188
6GC7|1|A|G|189
6GC7|1|A|A|190
6GC7|1|A|A|191
6GC7|1|A|C|192
6GC7|1|A|U|193
6GC7|1|A|G|194
*
6GC7|1|A|C|201
6GC7|1|A|U|202
6GC7|1|A|A|203
6GC7|1|A|A|204
6GC7|1|A|G|205
6GC7|1|A|U|206
6GC7|1|A|A|207
6GC7|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34