IL_6GC7_015

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6GC7|1|A|G|801, 6GC7|1|A|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC7_015 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.2365

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6GC7|1|A|G|674
6GC7|1|A|A|675
6GC7|1|A|A|676
6GC7|1|A|A|677
6GC7|1|A|C|678
*
6GC7|1|A|G|799
6GC7|1|A|A|800
6GC7|1|A|G|801
6GC7|1|A|A|802
6GC7|1|A|U|803
6GC7|1|A|A|804
6GC7|1|A|G|805
6GC7|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4