IL_6GC7_073

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

6GC7|1|A|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC7_073 not in the Motif Atlas

Geometric match to IL_7A0S_098

Geometric discrepancy: 0.2719

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6GC7|1|A|G|997
6GC7|1|A|C|998
6GC7|1|A|U|999
6GC7|1|A|A|1000
6GC7|1|A|A|1001
6GC7|1|A|G|1002
*
6GC7|1|A|C|1153
6GC7|1|A|G|1154
6GC7|1|A|A|1155
6GC7|1|A|A|1156
6GC7|1|A|G|1157
6GC7|1|A|C|1158

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21

Chain Z

50S ribosomal protein L30