3D structure

PDB id
6GC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate - 50S rec*
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GC8_007 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.1129
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6GC8|1|A|C|239
6GC8|1|A|C|240
6GC8|1|A|A|241
6GC8|1|A|G|242
6GC8|1|A|U|243
6GC8|1|A|A|244
6GC8|1|A|G|245
*
6GC8|1|A|C|253
6GC8|1|A|G|254
6GC8|1|A|A|255
6GC8|1|A|A|256
6GC8|1|A|C|257
6GC8|1|A|G|258

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15

Coloring options:


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