3D structure

PDB id
6GC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate - 50S rec*
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
6GC8|1|A|U|2111, 6GC8|1|A|U|2118
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GC8_084 not in the Motif Atlas
Homologous match to IL_3U4M_002
Geometric discrepancy: 0.5286
The information below is about IL_3U4M_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_32056.1
Basepair signature
cWW-L-cWW-L-L-tWH-R-L-R-L
Number of instances in this motif group
3

Unit IDs

6GC8|1|A|G|2110
6GC8|1|A|U|2111
6GC8|1|A|G|2112
6GC8|1|A|U|2113
6GC8|1|A|A|2114
6GC8|1|A|G|2115
6GC8|1|A|G|2116
6GC8|1|A|A|2117
6GC8|1|A|U|2118
6GC8|1|A|A|2119
6GC8|1|A|G|2120
*
6GC8|1|A|C|2178
6GC8|1|A|C|2179

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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