IL_6GC8_119

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

6GC8|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC8_119 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.317

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6GC8|1|A|G|880
6GC8|1|A|G|881
6GC8|1|A|G|882
*
6GC8|1|A|U|894
6GC8|1|A|U|895
6GC8|1|A|A|896
6GC8|1|A|C|897

Current chains

Chain A

23S ribosomal RNA

Nearby chains