IL_6GC8_120

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCA*UGC

Length

7 nucleotides

Bulged bases

6GC8|1|A|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC8_120 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2341

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6GC8|1|A|G|993
6GC8|1|A|C|994
6GC8|1|A|C|995
6GC8|1|A|A|996
*
6GC8|1|A|U|1159
6GC8|1|A|G|1160
6GC8|1|A|C|1161

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21

Chain Z

50S ribosomal protein L30