3D structure

PDB id
6GC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate - 50S rec*
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GC8_130 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.1183
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

6GC8|1|A|U|1851
6GC8|1|A|U|1852
6GC8|1|A|A|1853
6GC8|1|A|A|1854
6GC8|1|A|U|1855
6GC8|1|A|U|1856
6GC8|1|A|G|1857
6GC8|1|A|A|1858
6GC8|1|A|U|1859
6GC8|1|A|G|1860
*
6GC8|1|A|U|1882
6GC8|1|A|U|1883
6GC8|1|A|G|1884
6GC8|1|A|A|1885
6GC8|1|A|U|1886
6GC8|1|A|C|1887
6GC8|1|A|G|1888
6GC8|1|A|A|1889
6GC8|1|A|A|1890
6GC8|1|A|G|1891

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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