IL_6GQ1_014
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6GQ1|1|1|A|398, 6GQ1|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQ1_014 not in the Motif Atlas
- Geometric match to IL_4WF9_015
- Geometric discrepancy: 0.1408
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6GQ1|1|1|G|376
6GQ1|1|1|A|377
6GQ1|1|1|A|378
6GQ1|1|1|C|379
*
6GQ1|1|1|G|390
6GQ1|1|1|A|391
6GQ1|1|1|G|392
6GQ1|1|1|U|393
6GQ1|1|1|G|394
6GQ1|1|1|A|395
6GQ1|1|1|A|396
6GQ1|1|1|A|397
6GQ1|1|1|A|398
6GQ1|1|1|A|399
6GQ1|1|1|G|400
6GQ1|1|1|U|401
6GQ1|1|1|A|402
6GQ1|1|1|C|403
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
Coloring options: